Index

L

lemon::common_cofactors (C++ member) lemon::common_fatty_acids (C++ member) lemon::common_peptides (C++ member) lemon::count (C++ type) lemon::count::atom_property (C++ function) lemon::count::print_residue_names (C++ function) lemon::count::residue_property (C++ function) lemon::count::residues (C++ function), [1] lemon::geometry (C++ type) lemon::geometry::geometry_error (C++ class) lemon::geometry::is_special_residue (C++ function) lemon::geometry::protein (C++ type) lemon::geometry::protein::angle_name (C++ function) lemon::geometry::protein::bond_name (C++ function) lemon::geometry::protein::dihedral_name (C++ function) lemon::geometry::protein::improper_name (C++ function) lemon::Hadoop (C++ class) lemon::Hadoop::Hadoop (C++ function) lemon::Hadoop::HADOOP_HEADER_SIZE (C++ member) lemon::Hadoop::has_next (C++ function) lemon::Hadoop::next (C++ function) lemon::large_entries (C++ member) lemon::launch (C++ function) lemon::map_combine (C++ struct) lemon::map_combine::map_combine (C++ function) lemon::map_combine::operator() (C++ function) lemon::Options (C++ class) lemon::Options::add_option (C++ function) lemon::Options::entries (C++ function) lemon::Options::ncpu (C++ function) lemon::Options::Options (C++ function), [1]

lemon::Options::parse_command_line (C++ function) lemon::Options::skip_entries (C++ function) lemon::Options::work_dir (C++ function) lemon::print_combine (C++ struct) lemon::print_combine::print_combine (C++ function) lemon::prune (C++ type) lemon::prune::cofactors (C++ function) lemon::prune::DEFAULT_DISTANCE (C++ member) lemon::prune::has_property (C++ function) lemon::prune::identical_residues (C++ function) lemon::prune::interactions (C++ function) lemon::prune::intersection (C++ function) lemon::prune::keep_interactions (C++ function) lemon::prune::remove_interactions (C++ function) lemon::read_hadoop_dir (C++ function) lemon::run_parallel (C++ function) lemon::select (C++ type) lemon::select::metal_ions (C++ function) lemon::select::nucleic_acids (C++ function) lemon::select::peptides (C++ function) lemon::select::residue_ids (C++ function) lemon::select::residue_property (C++ function) lemon::select::small_molecules (C++ function) lemon::select::specific_residues (C++ function) lemon::separate (C++ type) lemon::separate::protein_and_ligand (C++ function) lemon::separate::protein_and_ligands (C++ function) lemon::separate::residues (C++ function) lemon::small_molecule_types (C++ member) lemon::tmalign::TMResult (C++ struct) lemon::xscore::VinaScore (C++ struct)

T

tmalign::lemon::TMscore (C++ function)

X

xscore::lemon::vina_score (C++ function)